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Intron Name: Anas_platyrhynchos_platyrhynchos_2_52604878_52606289_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52604878 - 52606289

Intron Length:

1412

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTAGA

5'SS Class:

strong_major

3'SS Sequence:

TTATTTTGAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCAC

U12 Branch Point Sequence:

TTATTTTGAACA

Flanking Amino Acid:

VLSIMHLSGIKDISKFAMHY

Intron Amino Acid Position:

236

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

80.8

33.6

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

75.7

0.58

73.5

40.5

Minor 5ss

36.8

-1.5

2.7

42.7

38.3

Minor BPS

68.7

0.58

1.3

76.68

33.9

Associated Gene:

Gene:

FAM8A1

Ensembl Gene ID:

ENSAPLG00000020765

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032635

52601623 - 52607225

5603

ENSAPLT00000020073

52601750 - 52607225

5476

ENSAPLT00000040974

52601093 - 52607225

6133

ENSAPLT00000035366

52601882 - 52607225

5344