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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_52606414_52606632_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52606414 - 52606632
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTGAA
U12 Branch Point Sequence:
TGGGATTGAACA
Flanking Amino Acid:
IYRLLVCFYEIICIWGAGGA
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
86.4
28.9
Major BPS
61.6
0.29
1.2
55.4
42
Major PPT
95.8
1.03
0.5
92.1
18.3
Minor 5ss
38.4
-1.3
2.7
52.9
43.7
Minor BPS
48
-0.1
1.7
57.79
41.6

Associated Gene:

Gene:
FAM8A1
Ensembl Gene ID:
ENSAPLG00000020765
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032635
52601623 - 52607225
5603
ENSAPLT00000020073
52601750 - 52607225
5476
ENSAPLT00000040974
52601093 - 52607225
6133
ENSAPLT00000035366
52601882 - 52607225
5344