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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_52606773_52607080_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52606773 - 52607080
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTGCG
5'SS Class:
major
3'SS Sequence:
ATTTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTATTTTCATT
Flanking Amino Acid:
VIPSSNVSMTTSTIRALIKN
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.3
69.7
41.3
Major BPS
100
1.24
0.5
100
0
Major PPT
85.4
0.8
0.8
82.7
32.9
Minor 5ss
34.4
-1.8
3.1
40.9
38.5
Minor BPS
58.4
0.35
1.7
79.53
37.3

Associated Gene:

Gene:
FAM8A1
Ensembl Gene ID:
ENSAPLG00000020765
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040974
52601093 - 52607225
6133
ENSAPLT00000035366
52601882 - 52607225
5344
ENSAPLT00000032635
52601623 - 52607225
5603
ENSAPLT00000020073
52601750 - 52607225
5476