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Intron Name: Anas_platyrhynchos_platyrhynchos_2_5277353_5277487_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5277353 - 5277487

Intron Length:

135

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

TTTGTGCCCTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTAAC

U12 Branch Point Sequence:

AGTTCCCTAACG

Flanking Amino Acid:

EEKLEALKWKLTMNGTKESE

Intron Amino Acid Position:

161

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.94

0.8

75.7

34.4

Major BPS

59.7

0.24

1.1

61.2

32.6

Major PPT

76.9

0.61

0.9

73.9

36.8

Minor 5ss

27.6

-2.6

34.8

41.6

Minor BPS

67.1

0.4

1.8

71.93

40.3

Associated Gene:

Gene:

CSRNP1

Ensembl Gene ID:

ENSAPLG00000001969

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041206

5274752 - 5280461

5710

ENSAPLT00000001971

5274728 - 5279743

5016