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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5279738_5280431_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5279738 - 5280431
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTACCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
IKSPLMETVKYMSSTVVYQ*
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
76.8
31.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80
0.68
0.7
75.1
29
Minor 5ss
38.2
-1.3
3.4
55.2
49
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
CSRNP1
Ensembl Gene ID:
ENSAPLG00000001969
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041206
5274752 - 5280461
5710