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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5309949_5311807_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5309949 - 5311807
Intron Length:
1859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGAGG
5'SS Class:
major
3'SS Sequence:
GTATGCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TGTATAGTAATA
Flanking Amino Acid:
GGAEGFHVHGVQENSPAQQG
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
60.4
45.8
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
76.6
0.6
1
69.5
41.4
Minor 5ss
25.8
-2.8
2.9
22.4
37.3
Minor BPS
45.8
-0.3
2.2
61.55
38.6

Associated Gene:

Gene:
GORASP1
Ensembl Gene ID:
ENSAPLG00000012693
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013224
5309886 - 5318546
8661