About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5314209_5314565_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5314209 - 5314565
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGTGC
5'SS Class:
major
3'SS Sequence:
ACTTTTTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
AGTTTAATAACT
Flanking Amino Acid:
IVGSDQILQESEDFFSLIES
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
64.8
42.3
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
81.5
0.71
0.7
81
30.3
Minor 5ss
35.7
-1.6
3.5
49.7
46.9
Minor BPS
55.8
0.26
1.9
77.49
38.1

Associated Gene:

Gene:
GORASP1
Ensembl Gene ID:
ENSAPLG00000012693
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013224
5309886 - 5318546
8661