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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5314697_5315249_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5314697 - 5315249
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGATC
5'SS Class:
major
3'SS Sequence:
TTTCCTTGCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CTTTTCTTAAAT
Flanking Amino Acid:
TPNGAWGGEGSLGCGIGYGY
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
69.9
40.6
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
79.5
0.66
0.9
75.6
32.9
Minor 5ss
35.8
-1.6
3.4
51.8
45
Minor BPS
77.9
0.95
1.3
88.72
36.1

Associated Gene:

Gene:
GORASP1
Ensembl Gene ID:
ENSAPLG00000012693
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013224
5309886 - 5318546
8661