Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5315389_5316026_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5315389 - 5316026

Intron Length:

638

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGTAAG

5'SS Class:

strong_major

3'SS Sequence:

TATGTCATTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTATTATGT

Flanking Amino Acid:

PTPSTNGYTETPLLAPTSQS

Intron Amino Acid Position:

236

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

79.7

35.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

76.8

0.6

0.9

67.1

43.4

Minor 5ss

41.2

-1

2.5

50.1

46.4

Minor BPS

53.2

0.18

2.1

80.47

41.5

Associated Gene:

Gene:

GORASP1

Ensembl Gene ID:

ENSAPLG00000012693

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013224

5309886 - 5318546

8661