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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5316172_5316540_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5316172 - 5316540
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTAATCTAAAAC
Flanking Amino Acid:
PPPLQRVMDPGFLDMSGISL
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
92.3
0.95
0.6
91.5
19.8
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
51.8
0.04
1.8
64.98
40.2

Associated Gene:

Gene:
GORASP1
Ensembl Gene ID:
ENSAPLG00000012693
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013224
5309886 - 5318546
8661