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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5316697_5317265_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5316697 - 5317265
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTGTTTAACT
Flanking Amino Acid:
MSNSEPSAYFENATTPNPED
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
77.9
36.8
Major BPS
100
1.24
0.5
100
0
Major PPT
88.5
0.87
0.7
80.8
36.5
Minor 5ss
36.4
-1.5
3.3
46.1
43.6
Minor BPS
78.9
0.98
1.6
95.57
31.2

Associated Gene:

Gene:
GORASP1
Ensembl Gene ID:
ENSAPLG00000012693
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013224
5309886 - 5318546
8661