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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53177753_53178748_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53177753 - 53178748
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGGG
5'SS Class:
major
3'SS Sequence:
TTTGGATTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ACTCTTTTGATA
Flanking Amino Acid:
VEHGALLQHNGTITCLEFYG
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
60.5
44.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
76.3
0.59
0.9
70.4
40.3
Minor 5ss
28.8
-2.4
3.5
34.5
43.8
Minor BPS
56
0.18
1.1
60.61
33.3

Associated Gene:

Gene:
PAK1IP1
Ensembl Gene ID:
ENSAPLG00000005241
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005443
53176788 - 53184948
8161