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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53178870_53178964_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53178870 - 53178964
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
TTGTTTTTATTA
Flanking Amino Acid:
WECLKSIKAHKGHVTSISIH
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
81.1
26.3
Major BPS
66.1
0.4
1
73
31.5
Major PPT
80.7
0.69
0.9
82.3
34.1
Minor 5ss
41
-1
2.9
52.8
38.5
Minor BPS
61.1
0.34
1.5
69.94
37.5

Associated Gene:

Gene:
PAK1IP1
Ensembl Gene ID:
ENSAPLG00000005241
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005443
53176788 - 53184948
8161