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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53179735_53180204_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53179735 - 53180204
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
ATGTGTATAAAA
Flanking Amino Acid:
RPAFIKNLKQNAHIIKWSPD
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
73.4
0.53
1
67.9
37.6
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
46.2
-0.2
2
59.71
40.1

Associated Gene:

Gene:
PAK1IP1
Ensembl Gene ID:
ENSAPLG00000005241
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005443
53176788 - 53184948
8161