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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53180538_53181920_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53180538 - 53181920
Intron Length:
1383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTAT
5'SS Class:
major
3'SS Sequence:
ATTTTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATTTTCTTCACA
Flanking Amino Acid:
CLCEFKAHENRIKDIYSFER
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
78.6
31.1
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
85.6
0.8
0.7
80.5
30.9
Minor 5ss
48
-0.2
2.5
66.9
44.3
Minor BPS
70.7
0.65
1.7
81.19
34.3

Associated Gene:

Gene:
PAK1IP1
Ensembl Gene ID:
ENSAPLG00000005241
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005443
53176788 - 53184948
8161