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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53182021_53183660_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53182021 - 53183660
Intron Length:
1640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTCTA
5'SS Class:
major
3'SS Sequence:
ATATTATATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTTTAATTAACC
Flanking Amino Acid:
IKVWNLDLNKIKDAPSLLCE
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.2
70.1
42
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
70.1
0.45
1
68.1
42
Minor 5ss
32.8
-2
3.1
41.5
44.9
Minor BPS
65.8
0.47
1.8
78.02
36.7

Associated Gene:

Gene:
PAK1IP1
Ensembl Gene ID:
ENSAPLG00000005241
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005443
53176788 - 53184948
8161