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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53190444_53191899_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53190444 - 53191899
Intron Length:
1456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TCTCTCATTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GACTCTTTAATC
Flanking Amino Acid:
QNPNNVWISLITSGTLTAVM
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
75.5
40.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
72.6
0.51
1
76.2
31.2
Minor 5ss
41.4
-1
3.1
55.9
42.3
Minor BPS
69.7
0.6
1.2
67.94
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005452
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005638
53188037 - 53192240
4204