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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53191988_53192182_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53191988 - 53192182
Intron Length:
195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAACAC
5'SS Class:
major
3'SS Sequence:
TCCCCTTACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTCTGTGAACT
Flanking Amino Acid:
FMPAGLIAGVSLLMVGRLAL
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.48
1.1
59.5
39.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
72.5
0.51
0.8
67.7
31.3
Minor 5ss
30.5
-2.2
3.3
41.8
45
Minor BPS
51.2
0.12
2.1
76.57
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005452
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005638
53188037 - 53192240
4204