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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53201159_53206596_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53201159 - 53206596
Intron Length:
5438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
PKRNVVITAVKGKSICPSNT
Intron Amino Acid Position:
1099

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
82.5
29.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
87.6
0.84
0.7
81.3
36.3
Minor 5ss
45.2
-0.5
2.6
59.7
39.1
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
NFX1
Ensembl Gene ID:
ENSAPLG00000005524
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039390
53200197 - 53244815
44619
ENSAPLT00000005771
53200197 - 53244815
44619