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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53205680_53206596_R

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
53205680 - 53206596
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTACAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTTAA
U12 Branch Point Sequence:
TTTTCCCTACAA
Flanking Amino Acid:
PKRNVVITAVKRVRRETTLE
Intron Amino Acid Position:
1099

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
82.5
29.7
Major BPS
70.7
0.51
0.9
61.7
35.7
Major PPT
59.7
0.22
1.1
61.3
32.7
Minor 5ss
45.2
-0.5
2.6
59.7
39.1
Minor BPS
57.6
0.23
2.1
77.61
38.8

Associated Gene:

Gene:
NFX1
Ensembl Gene ID:
ENSAPLG00000005524
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017975
53205573 - 53244815
39243