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Intron Name: Anas_platyrhynchos_platyrhynchos_2_53206743_53209615_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53206743 - 53209615

Intron Length:

2873

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTAATTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TCTTTTTTAATT

Flanking Amino Acid:

FVLCWRCLYAWASIQKRVIV

Intron Amino Acid Position:

1062

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.6

0.96

0.8

27.7

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

88.6

0.87

0.8

86.6

31.3

Minor 5ss

38.8

-1.3

3.4

43.6

Minor BPS

78.6

0.98

86.64

33.8

Associated Gene:

Gene:

NFX1

Ensembl Gene ID:

ENSAPLG00000005524

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032513

53206703 - 53244815

38113