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Intron Name: Anas_platyrhynchos_platyrhynchos_2_53206743_53211448_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53206743 - 53211448

Intron Length:

4706

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTAATTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TCTTTTTTAATT

Flanking Amino Acid:

MRMLVEAVNKGKHTKKSHCY

Intron Amino Acid Position:

1051

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.83

1.2

90.9

28.7

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

88.6

0.87

0.8

86.6

31.3

Minor 5ss

37.1

-1.5

2.8

51.6

44.9

Minor BPS

78.6

0.98

86.64

33.8

Associated Gene:

Gene:

NFX1

Ensembl Gene ID:

ENSAPLG00000005524

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005771

53200197 - 53244815

44619

ENSAPLT00000039390

53200197 - 53244815

44619

ENSAPLT00000017975

53205573 - 53244815

39243