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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53211516_53213188_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53211516 - 53213188
Intron Length:
1673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GCTGTTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTGCCTCATTT
Flanking Amino Acid:
KYSDLLKEDARKDLKFVSDV
Intron Amino Acid Position:
1028

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
80.6
31.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.3
0.57
1
68.6
42.1
Minor 5ss
41.4
-1
3.1
59
45.7
Minor BPS
53
0.17
1.9
74.49
42.7

Associated Gene:

Gene:
NFX1
Ensembl Gene ID:
ENSAPLG00000005524
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017975
53205573 - 53244815
39243
ENSAPLT00000005771
53200197 - 53244815
44619
ENSAPLT00000040886
53209143 - 53244815
35673
ENSAPLT00000039390
53200197 - 53244815
44619
ENSAPLT00000032513
53206703 - 53244815
38113