Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53213567_53217913_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53213567 - 53217913

Intron Length:

4347

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTGTACT

5'SS Class:

major

3'SS Sequence:

TTTAATAATTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAATA

Flanking Amino Acid:

ICSEASNTYQRLQCDEECLA

Intron Amino Acid Position:

947

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.6

0.65

1.1

78.3

35.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

74.5

0.55

71.5

42.7

Minor 5ss

40.8

-1

2.4

53.1

43.6

Minor BPS

82.2

1.01

0.9

86.33

25.3

Associated Gene:

Gene:

NFX1

Ensembl Gene ID:

ENSAPLG00000005524

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039390

53200197 - 53244815

44619