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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53215314_53217913_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53215314 - 53217913
Intron Length:
2600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTACT
5'SS Class:
major
3'SS Sequence:
TGTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAT
U12 Branch Point Sequence:
CCTGCCTCAAGT
Flanking Amino Acid:
ICSEASNTYQRIAAISIATK
Intron Amino Acid Position:
947

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
78.3
35.6
Major BPS
70.5
0.51
1.1
69.7
35.5
Major PPT
90.2
0.9
0.7
88.4
28.7
Minor 5ss
40.8
-1
2.4
53.1
43.6
Minor BPS
49.7
0.06
2
67.41
49.1

Associated Gene:

Gene:
NFX1
Ensembl Gene ID:
ENSAPLG00000005524
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032513
53206703 - 53244815
38113
ENSAPLT00000017975
53205573 - 53244815
39243
ENSAPLT00000005771
53200197 - 53244815
44619
ENSAPLT00000040886
53209143 - 53244815
35673