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Intron Name: Anas_platyrhynchos_platyrhynchos_2_53218317_53218679_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53218317 - 53218679

Intron Length:

363

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTCTT

5'SS Class:

strong_major

3'SS Sequence:

TTCCCTCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTCAT

U12 Branch Point Sequence:

TGGTTGTCATCT

Flanking Amino Acid:

TQKWCMGKHELRSNIPCHLT

Intron Amino Acid Position:

846

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

84.6

33.2

Major BPS

84.8

0.86

1.1

85.7

34.9

Major PPT

86.5

0.82

0.7

84.3

23.5

Minor 5ss

41.9

-0.9

3.1

59.6

38.8

Minor BPS

43.6

-0.4

2.3

64.25

46.1

Associated Gene:

Gene:

NFX1

Ensembl Gene ID:

ENSAPLG00000005524

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032513

53206703 - 53244815

38113

ENSAPLT00000017975

53205573 - 53244815

39243

ENSAPLT00000005771

53200197 - 53244815

44619

ENSAPLT00000040886

53209143 - 53244815

35673

ENSAPLT00000039390

53200197 - 53244815

44619