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Intron Name: Anas_platyrhynchos_platyrhynchos_2_53218760_53219489_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53218760 - 53219489

Intron Length:

730

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTTAG

5'SS Class:

strong_major

3'SS Sequence:

CCTGTGGCTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAATT

Flanking Amino Acid:

CTRPHDCNHPVYHSCHSEEK

Intron Amino Acid Position:

819

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.6

1.07

0.7

30.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

68.7

0.42

40.2

Minor 5ss

39.5

-1.2

2.8

48.7

47.5

Minor BPS

84.9

1.17

0.8

94.97

24.6

Associated Gene:

Gene:

NFX1

Ensembl Gene ID:

ENSAPLG00000005524

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039390

53200197 - 53244815

44619

ENSAPLT00000032513

53206703 - 53244815

38113

ENSAPLT00000017975

53205573 - 53244815

39243

ENSAPLT00000040886

53209143 - 53244815

35673

ENSAPLT00000005771

53200197 - 53244815

44619