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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53219610_53224300_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53219610 - 53224300
Intron Length:
4691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGTGTTAA
5'SS Class:
major
3'SS Sequence:
TTTGCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
TCTTTTGTGATT
Flanking Amino Acid:
RGSCQTCWQTSFDELTCYCG
Intron Amino Acid Position:
779

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
71.8
28.6
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
88.4
0.86
0.8
80.8
36.8
Minor 5ss
41.9
-0.9
2.7
48.3
42.4
Minor BPS
50.9
0.11
2
73.17
39

Associated Gene:

Gene:
NFX1
Ensembl Gene ID:
ENSAPLG00000005524
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039390
53200197 - 53244815
44619
ENSAPLT00000032513
53206703 - 53244815
38113
ENSAPLT00000017975
53205573 - 53244815
39243
ENSAPLT00000005771
53200197 - 53244815
44619
ENSAPLT00000040886
53209143 - 53244815
35673