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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53228231_53229334_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53228231 - 53229334
Intron Length:
1104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCTAATGTAATT
Flanking Amino Acid:
IYCRCGFKKKEVPCALLRNK
Intron Amino Acid Position:
705

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
81.2
0.7
0.9
73.5
41.9
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
47.5
-0.1
2.1
68.97
42.6

Associated Gene:

Gene:
NFX1
Ensembl Gene ID:
ENSAPLG00000005524
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017975
53205573 - 53244815
39243
ENSAPLT00000005771
53200197 - 53244815
44619
ENSAPLT00000040886
53209143 - 53244815
35673
ENSAPLT00000039390
53200197 - 53244815
44619
ENSAPLT00000032513
53206703 - 53244815
38113