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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53230749_53230886_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53230749 - 53230886
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGTCA
5'SS Class:
major
3'SS Sequence:
GTTGTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTGTTGTTATTT
Flanking Amino Acid:
GSFSCQNTCGKKLNCGRHNC
Intron Amino Acid Position:
599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
72.1
33.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
81
0.7
0.9
73.5
41.9
Minor 5ss
38.7
-1.3
3.2
48.1
42
Minor BPS
49.9
0.07
2.2
74.68
43.1

Associated Gene:

Gene:
NFX1
Ensembl Gene ID:
ENSAPLG00000005524
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005771
53200197 - 53244815
44619
ENSAPLT00000040886
53209143 - 53244815
35673
ENSAPLT00000039390
53200197 - 53244815
44619
ENSAPLT00000032513
53206703 - 53244815
38113
ENSAPLT00000017975
53205573 - 53244815
39243