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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53230987_53232042_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53230987 - 53232042
Intron Length:
1056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTCTGTGGAATA
Flanking Amino Acid:
CAPCQLTVQQVCYCGSNFKE
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.4
1.12
0.6
90.5
20.4
Major BPS
75.1
0.62
1
65.6
41
Major PPT
89.1
0.88
0.6
88.9
20.4
Minor 5ss
36
-1.6
2.7
44.9
43.2
Minor BPS
43.3
-0.5
2.3
59.09
41.8

Associated Gene:

Gene:
NFX1
Ensembl Gene ID:
ENSAPLG00000005524
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032513
53206703 - 53244815
38113
ENSAPLT00000017975
53205573 - 53244815
39243
ENSAPLT00000005771
53200197 - 53244815
44619
ENSAPLT00000040886
53209143 - 53244815
35673
ENSAPLT00000039390
53200197 - 53244815
44619