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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53232183_53234037_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53232183 - 53234037
Intron Length:
1855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAAAAT
5'SS Class:
major
3'SS Sequence:
GTATTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
AGGTAGCTAACT
Flanking Amino Acid:
VTKTCECGQTSHSVRCGQST
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
74
36.4
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
82.9
0.74
0.9
77.2
36.8
Minor 5ss
33.1
-1.9
3.4
48
47.7
Minor BPS
44.2
-0.3
2.4
65.14
44.7

Associated Gene:

Gene:
NFX1
Ensembl Gene ID:
ENSAPLG00000005524
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039390
53200197 - 53244815
44619
ENSAPLT00000032513
53206703 - 53244815
38113
ENSAPLT00000017975
53205573 - 53244815
39243
ENSAPLT00000040886
53209143 - 53244815
35673
ENSAPLT00000005771
53200197 - 53244815
44619