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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53239186_53240628_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53239186 - 53240628
Intron Length:
1443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATCTTTAATT
Flanking Amino Acid:
WARSPASQAEDGNSGWRCPA
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
84.2
33.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.8
0.8
0.7
81
29.9
Minor 5ss
39.6
-1.2
3.3
59.2
45.4
Minor BPS
84.8
1.17
0.9
92.65
29.3

Associated Gene:

Gene:
NFX1
Ensembl Gene ID:
ENSAPLG00000005524
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039390
53200197 - 53244815
44619
ENSAPLT00000032513
53206703 - 53244815
38113
ENSAPLT00000017975
53205573 - 53244815
39243
ENSAPLT00000005771
53200197 - 53244815
44619
ENSAPLT00000040886
53209143 - 53244815
35673