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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53266514_53267341_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53266514 - 53267341
Intron Length:
828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGGCC
5'SS Class:
major
3'SS Sequence:
CTCTTCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TCTTCCTTACAG
Flanking Amino Acid:
GCANCGVLQQNINEYVAALV
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.3
0.36
1.3
62.4
38.1
Major BPS
74
0.6
1
65.6
41.1
Major PPT
85.6
0.8
0.7
79.7
25.9
Minor 5ss
34.6
-1.7
3.8
50.4
46.4
Minor BPS
62.7
0.26
1.8
68.4
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027178
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044853
53266427 - 53298830
32404