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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53269498_53270289_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
53269498 - 53270289
Intron Length:
792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTAAAAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.4
0.82
0.8
84.4
30.5
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
48.7
-0
2.1
77.5
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027178
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044853
53266427 - 53298830
32404
ENSAPLT00000023616
53267342 - 53298830
31489