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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5327012_5327356_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5327012 - 5327356
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGAGA
5'SS Class:
major
3'SS Sequence:
TTCTGTGTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCATTCATA
Flanking Amino Acid:
FGEAGGRTLFRLLCRDSGGE
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
64.7
40.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
74.1
0.54
0.9
72.7
37.5
Minor 5ss
37.1
-1.5
3.2
48.6
47.2
Minor BPS
56.2
0.19
2
72.1
40.4

Associated Gene:

Gene:
WDR48
Ensembl Gene ID:
ENSAPLG00000012688
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013201
5323114 - 5348178
25065