Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53271472_53276513_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53271472 - 53276513

Intron Length:

5042

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTGAGTGAT

5'SS Class:

major

3'SS Sequence:

TTGTTTTTAACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTCAA

U12 Branch Point Sequence:

TTGTTTTTAACA

Flanking Amino Acid:

IKEEIVKSDAVRKKLEAKVK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.4

0.5

1.1

70.4

35.5

Major BPS

0.82

0.8

83.9

25.3

Major PPT

83.7

0.76

0.9

35.4

Minor 5ss

30.9

-2.2

3.3

40.8

45.4

Minor BPS

79.5

0.92

82.37

32.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027178

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044853

53266427 - 53298830

32404

ENSAPLT00000023616

53267342 - 53298830

31489