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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53280005_53286441_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53280005 - 53286441
Intron Length:
6437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTCC
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTGTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
AATTTCTTAATA
Flanking Amino Acid:
PEKRRLFITEEAVQNHQKIR
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.8
35
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
71
0.47
0.9
65.2
40.7
Minor 5ss
40.1
-1.1
3
53.2
44.1
Minor BPS
78
0.88
1
78.63
31

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027178
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044853
53266427 - 53298830
32404
ENSAPLT00000023616
53267342 - 53298830
31489