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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53293138_53294398_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53293138 - 53294398
Intron Length:
1261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGTGT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
AAAAACTTATAT
Flanking Amino Acid:
RLFCYSLLKEGFPDAVKLIL
Intron Amino Acid Position:
1930

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1
65.5
40.9
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
43.9
-0.7
3.3
64.5
46.9
Minor BPS
45.9
-0.2
1.8
60.42
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027178
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023616
53267342 - 53298830
31489
ENSAPLT00000047517
53282041 - 53298830
16790
ENSAPLT00000044853
53266427 - 53298830
32404