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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5329378_5330213_R

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5329378 - 5330213
Intron Length:
836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTTTT
5'SS Class:
weak_major
3'SS Sequence:
ACTGTCTTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TTTTTTGTAACT
Flanking Amino Acid:
FSSPDGSDPKLNLGGLLLQA
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
82.6
30.5
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
69.8
0.45
1
64.8
40.8
Minor 5ss
66.3
0.55
2.2
79.9
33.6
Minor BPS
69.1
0.68
2
90.89
33.1

Associated Gene:

Gene:
WDR48
Ensembl Gene ID:
ENSAPLG00000012688
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013201
5323114 - 5348178
25065