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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53294560_53295298_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53294560 - 53295298
Intron Length:
739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTAATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CCTTCTGTAATT
Flanking Amino Acid:
CLSAYLSWEQSSSLDAGIMA
Intron Amino Acid Position:
1984

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1.1
81.4
33.4
Major BPS
100
1.24
0.5
100
0
Major PPT
76.5
0.6
0.9
66.9
42.9
Minor 5ss
48.4
-0.1
2.5
68.6
42.1
Minor BPS
57.6
0.32
2
74.65
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027178
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047517
53282041 - 53298830
16790
ENSAPLT00000044853
53266427 - 53298830
32404
ENSAPLT00000023616
53267342 - 53298830
31489