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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53296925_53297632_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53296925 - 53297632
Intron Length:
708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTAAATATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CCTTTTTTAAAT
Flanking Amino Acid:
SIIALTLRLIGRLGQIGLKE
Intron Amino Acid Position:
2083

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.8
0.56
1
70.9
43.6
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
66.3
0.59
1.4
75.95
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027178
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023616
53267342 - 53298830
31489
ENSAPLT00000047517
53282041 - 53298830
16790
ENSAPLT00000044853
53266427 - 53298830
32404