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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53297732_53298648_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53297732 - 53298648
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTCT
5'SS Class:
strong_major
3'SS Sequence:
TAACTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTGTTTTAACT
Flanking Amino Acid:
ALFVHHAKEEGVPWGVQLAA
Intron Amino Acid Position:
2116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
75
35.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
82.2
0.73
0.9
77
36.6
Minor 5ss
39.4
-1.2
3.3
57.2
47
Minor BPS
78.3
0.97
1.2
90.89
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027178
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047517
53282041 - 53298830
16790
ENSAPLT00000044853
53266427 - 53298830
32404
ENSAPLT00000023616
53267342 - 53298830
31489