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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53302831_53303188_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53302831 - 53303188
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
CTTCCCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTAGTAT
U12 Branch Point Sequence:
TGGTGCTGTAGT
Flanking Amino Acid:
VDLACLNNFSRVVNTIARLA
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.3
63.5
42.9
Major BPS
46.8
-0.2
1.6
45.8
47.2
Major PPT
78.3
0.64
0.7
72.9
25.2
Minor 5ss
32.7
-2
3.3
44.7
43.5
Minor BPS
42
-0.5
2.4
61.31
47.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006454
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006698
53302440 - 53308738
6299