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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5330311_5330630_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5330311 - 5330630
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCTAC
5'SS Class:
major
3'SS Sequence:
CTTCTTCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CTTCTTCCAACA
Flanking Amino Acid:
NWFSVDLKTGMLTITLDESD
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
65.4
37.4
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
77.8
0.63
0.8
73.7
29.9
Minor 5ss
38.3
-1.3
3
41.5
45.4
Minor BPS
47
-0.2
1.8
61.19
39

Associated Gene:

Gene:
WDR48
Ensembl Gene ID:
ENSAPLG00000012688
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013201
5323114 - 5348178
25065