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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53303317_53303874_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53303317 - 53303874
Intron Length:
558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCGG
5'SS Class:
strong_major
3'SS Sequence:
TTAAAACTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTCACAACT
Flanking Amino Acid:
GVSMWCELCQGNFFDEFQME
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
63.6
48.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
71.3
0.48
1
63.3
42.5
Minor 5ss
37.3
-1.4
3
47.7
47.8
Minor BPS
66
0.58
1.8
89.17
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006454
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006698
53302440 - 53308738
6299