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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53304052_53304682_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53304052 - 53304682
Intron Length:
631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
TCTCTCCCTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTGTTTTTAACT
Flanking Amino Acid:
CPCLKVSVELPSLSSSSRIV
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
70.5
33.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
70.8
0.47
1
68.4
32.3
Minor 5ss
34.8
-1.7
3.2
43.2
39
Minor BPS
75.2
0.87
1.2
82.67
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006454
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006698
53302440 - 53308738
6299