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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53304791_53305667_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53304791 - 53305667
Intron Length:
877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGACTC
5'SS Class:
major
3'SS Sequence:
TGTGTCTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGAAAT
U12 Branch Point Sequence:
TTGGTGTGAATG
Flanking Amino Acid:
FREPRVPDFDVSIYLPALKT
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
71.9
38
Major BPS
58.4
0.21
1.2
65
38.7
Major PPT
75.4
0.57
0.8
73.6
37
Minor 5ss
39
-1.2
3.3
56.5
41
Minor BPS
43.8
-0.6
2.2
50.93
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006454
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006698
53302440 - 53308738
6299