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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53305743_53307762_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53305743 - 53307762
Intron Length:
2020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
GATTGTATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
CTTTCCTAAAAC
Flanking Amino Acid:
ERMKNLSHSIVIEANLNGEM
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
75
30.4
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
74.1
0.54
1
66.6
43.6
Minor 5ss
42.1
-0.9
2.8
55
43.6
Minor BPS
65.2
0.46
1.8
75.43
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006454
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006698
53302440 - 53308738
6299