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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5330739_5331442_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5330739 - 5331442
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGGTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAC
U12 Branch Point Sequence:
AACTCAGTAACA
Flanking Amino Acid:
NNVAYWDVLKACKVEDLGKV
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
65.6
0.39
1.1
67.7
34.6
Major PPT
78
0.63
1
72.2
42.7
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
49.1
-0
2.2
64.22
41.8

Associated Gene:

Gene:
WDR48
Ensembl Gene ID:
ENSAPLG00000012688
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013201
5323114 - 5348178
25065